On Fri, Jun 5, 2015 at 3:09 AM, Peter peter@pajamian.dhs.org wrote:
On 06/04/2015 07:49 AM, Tony Schreiner wrote:
I run R2spec -s tarball to create a spec file, and most of the time it works ok, but sometimes (RPostgresSQL, Rcpp for example) the package has test or example programs that start with
#!/usr/bin/r
with lower case r, and the resulting package then winds up with a dependency on /usr/bin/r, which can't be resolved.
So far I have solved it by editing all the files and replacing with /usr/bin/R, recreating the tarball and going through the process again,
but
I have to believe there is an easier way.
Kind of. This is an obvious error in the packaged scripts in the tarballs. I generally don't recommend modifying the original tarball as I like it to be a true representation of the tarball source that you get from upstream. What I do instead is patch it in the spec file.
In this case it would probably be easier to do one line of perl or awk that patches the shebang line in all the scripts at build time than it would be to generate individual patch files for each source tarball. You would add this to the %prep stage of the spec files, something like this after the initial %setup macro:
perl -pi -e 's:^#!/usr/bin/r:#!/usr/bin/R: unless $i++' path/to/R/scripts/*.R
Peter _______________________________________________
Peter and Leon
The %define __find_requires %{nil} sounds too disruptive. I'll look at scripting the corrections.
Maybe I will request at EPEL to see they would consider making a link to /usr/bin/r. However I checked a Debian installation, and it's not there either. So I don't know what the creators of the CRAN package are targeting.
Thanks again Tony