[CentOS] yum install fails - itertoolsmodule.so

Thu Nov 7 16:25:54 UTC 2019
Paddy Doyle <paddy at tchpc.tcd.ie>

Hi Gary,

That "Input/output error" suggests a disk problem to me. Does that file
/usr/lib64/python2.7/lib-dynload/itertoolsmodule.so actually exist and is
it readable?

Also look the the output of 'rpm -V python-libs' to see if rpm considers
the installed files to be corrupt.

If it's not that, then you could try 'yum reinstall python-libs'.

Paddy

On Thu, Nov 07, 2019 at 04:18:18PM +0000, Gary Stainburn wrote:

> I've just tried a yum update on one of my C7 boxes and got the following output.
> 
> I'm guessing to fix this I need to re-install the RPM, but I can't remove it because of dependancies, so how can I fix the problem?
> I've managed to download a later version of the RPM, but haven't managed to find the same version as the one installed.
> 
> Gary
> 
> [root at zeppo ~]# yum install
> There was a problem importing one of the Python modules
> required to run yum. The error leading to this problem was:
> 
>    /usr/lib64/python2.7/lib-dynload/itertoolsmodule.so: cannot read file data: Input/output error
> 
> Please install a package which provides this module, or
> verify that the module is installed correctly.
> 
> It's possible that the above module doesn't match the
> current version of Python, which is:
> 2.7.5 (default, Sep 15 2016, 22:37:39) 
> [GCC 4.8.5 20150623 (Red Hat 4.8.5-4)]
> 
> If you cannot solve this problem yourself, please go to 
> the yum faq at:
>   http://yum.baseurl.org/wiki/Faq
>   
> 
> [root at zeppo ~]# rpm -qf /usr/lib64/python2.7/lib-dynload/itertoolsmodule.so
> python-libs-2.7.5-39.el7_2.x86_64
> [root at zeppo ~]# 
> [root at zeppo ~]# rpm -e python-libs-2.7.5-39.el7_2.x86_64
> error: Failed dependencies:
>         libpython2.7.so.1.0()(64bit) is needed by (installed) python-lxml-3.2.1-4.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) yum-metadata-parser-1.1.4-10.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) pyliblzma-0.5.3-11.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) pyxattr-0.5.1-5.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) cmpi-bindings-pywbem-0.9.5-6.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) python-kmod-0.9-4.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) newt-python-0.52.15-4.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) python-setproctitle-1.1.6-5.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) python-ethtool-0.8-5.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) python-urwid-1.1.1-3.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) python-pycurl-7.19.0-17.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) PyYAML-3.10-11.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) pygpgme-0.3-9.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) python-cups-1.9.63-6.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) python-2.7.5-39.el7_2.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) libxml2-python-2.9.1-6.el7_2.3.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) gdb-7.6.1-80.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) python-dmidecode-3.10.13-11.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) python-perf-3.10.0-327.36.3.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) cryptsetup-python-1.6.7-1.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) pyparted-1:3.9-13.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) rpm-python-4.11.3-17.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) iscsi-initiator-utils-6.2.0.873-33.el7_2.2.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) python-pcp-3.10.6-2.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) lvm2-python-libs-7:2.02.130-5.el7_2.5.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) perf-3.10.0-327.36.3.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) m2crypto-0.21.1-17.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) python-pillow-2.0.0-19.gitd1c6db8.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) bacula-libs-5.2.13-23.1.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) bacula-storage-5.2.13-23.1.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) bacula-client-5.2.13-23.1.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) gnome-python2-canvas-2.28.1-14.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) gnome-python2-bonobo-2.28.1-14.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) gnome-python2-gnomevfs-2.28.1-14.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) gnome-python2-gnome-2.28.1-14.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) pytalloc-2.1.6-1.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) samba-libs-0:4.4.4-9.el7.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) policycoreutils-python-2.5-11.el7_3.x86_64
>         libpython2.7.so.1.0()(64bit) is needed by (installed) systemd-python-219-30.el7_3.8.x86_64
>         python-libs(x86-64) = 2.7.5-39.el7_2 is needed by (installed) python-2.7.5-39.el7_2.x86_64
> [root at zeppo ~]#
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-- 
Paddy Doyle
Research IT / Trinity Centre for High Performance Computing,
Lloyd Building, Trinity College Dublin, Dublin 2, Ireland.
Phone: +353-1-896-3725
https://www.tchpc.tcd.ie/