Problem with yum on CentOS Linux release 7.2.1511 (Core) with 3.10.0-327.36.3.el7.x86_64 kernel
Everyone,
I am at a loss on this problem would appreciate some guidance as to where to start to fix it.
I noticed that my home gateway server was not being updated with the new kernel and other software, and when I ran yum it aborted with the following notices. I tried a yum clean all, but this did not fix the problem. I thought the problem may be related to one of the repos, but I have other machines in the same network that update properly. I disabled all repos except the BASE to try to simply the problem and still the same problem.
Any help would be appreciated.
Thanks,
Greg Ennis
Loaded plugins: aliases, changelog, fastestmirror, langpacks, product- id, search- : disabled-repos, subscription-manager, tmprepo, verify, versionlock This system is not registered with Subscription Management. You can use subscription-manager to register. base | 3.6 kB 00:00:00 (1/2): base/7/x86_64/group_gz | 155 kB 00:00:00 (2/2): base/7/x86_64/primary_db | 5.6 MB 00:00:01 Determining fastest mirrors * base: centos.mirror.lstn.net Traceback (most recent call last): File "/usr/bin/yum", line 29, in <module> yummain.user_main(sys.argv[1:], exit_code=True) File "/usr/share/yum-cli/yummain.py", line 365, in user_main errcode = main(args) File "/usr/share/yum-cli/yummain.py", line 174, in main result, resultmsgs = base.doCommands() File "/usr/share/yum-cli/cli.py", line 573, in doCommands return self.yum_cli_commands[self.basecmd].doCommand(self, self.basecmd, self.extcmds) File "/usr/share/yum-cli/yumcommands.py", line 500, in doCommand ret = base.updatePkgs(extcmds, update_to=(basecmd == 'update-to')) File "/usr/share/yum-cli/cli.py", line 1015, in updatePkgs self.update() File "/usr/lib/python2.7/site-packages/yum/__init__.py", line 5114, in update tx_return.extend(self.update(po=new)) File "/usr/lib/python2.7/site-packages/yum/__init__.py", line 5328, in update available_pkg, updated_pkg) File "/usr/lib/python2.7/site-packages/yum/__init__.py", line 5033, in _add_up_txmbr txmbr = self.tsInfo.addUpdate(upkg, ipkg) File "/usr/lib/python2.7/site-packages/yum/transactioninfo.py", line 518, in addUpdate self.add(txmbr) File "/usr/lib/python2.7/site-packages/yum/transactioninfo.py", line 289, in add self.addUpdated(oldpo, txmember.po) File "/usr/lib/python2.7/site-packages/yum/transactioninfo.py", line 547, in addUpdated txmbr = TransactionMember(po) File "/usr/lib/python2.7/site-packages/yum/transactioninfo.py", line 830, in __init__ po.yumdb_info.get('from_repo') File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1946, in get res = self._read(attr) File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1861, in _read info = misc.stat_f(fn, ignore_EACCES=True) File "/usr/lib/python2.7/site-packages/yum/misc.py", line 962, in stat_f return os.stat(filename) OSError: [Errno 5] Input/output error: '/var/lib/yum/yumdb/f/27ef8f508b150c2162f1bdcb1bc41713836b88ee-fence- agents-ipdu-4.0.11-27.el7_2.9-x86_64/from_repo'
Am 14.12.2016 um 14:44 schrieb Gregory P. Ennis:
Everyone,
I am at a loss on this problem would appreciate some guidance as to where to start to fix it.
I noticed that my home gateway server was not being updated with the new kernel and other software, and when I ran yum it aborted with the following notices. I tried a yum clean all, but this did not fix the problem. I thought the problem may be related to one of the repos, but I have other machines in the same network that update properly. I disabled all repos except the BASE to try to simply the problem and still the same problem.
Any help would be appreciated.
Thanks,
Greg Ennis
Loaded plugins: aliases, changelog, fastestmirror, langpacks, product- id, search- : disabled-repos, subscription-manager, tmprepo, verify, versionlock This system is not registered with Subscription Management. You can use subscription-manager to register. base | 3.6 kB 00:00:00 (1/2): base/7/x86_64/group_gz | 155 kB 00:00:00 (2/2): base/7/x86_64/primary_db | 5.6 MB 00:00:01 Determining fastest mirrors
- base: centos.mirror.lstn.net
Traceback (most recent call last):
[ ...
OSError: [Errno 5] Input/output error: '/var/lib/yum/yumdb/f/27ef8f508b150c2162f1bdcb1bc41713836b88ee-fence- agents-ipdu-4.0.11-27.el7_2.9-x86_64/from_repo'
Such an I/O error indicates either a phyisical problem (storage broken) or filesystem full or read-only.
Do other opertions besides a "yum update" work properly? Specificly do disk operations succeed? Do you see any error messages in /var/log/messages respectively by "journalctl -b"?
Regards
Alexander
Am 14.12.2016 um 14:44 schrieb Gregory P. Ennis:
Everyone,
I am at a loss on this problem would appreciate some guidance as to where to start to fix it.
I noticed that my home gateway server was not being updated with the new kernel and other software, and when I ran yum it aborted with the following notices. I tried a yum clean all, but this did not fix the problem. I thought the problem may be related to one of the repos, but I have other machines in the same network that update properly. I disabled all repos except the BASE to try to simply the problem and still the same problem.
Any help would be appreciated.
Thanks,
Greg Ennis
Loaded plugins: aliases, changelog, fastestmirror, langpacks, product- id, search- : disabled-repos, subscription-manager, tmprepo, verify, versionlock This system is not registered with Subscription Management. You can use subscription-manager to register. base | 3.6 kB 00:00:00 (1/2): base/7/x86_64/group_gz | 155 kB 00:00:00 (2/2): base/7/x86_64/primary_db | 5.6 MB 00:00:01 Determining fastest mirrors
- base: centos.mirror.lstn.net
Traceback (most recent call last):
[ ...
OSError: [Errno 5] Input/output error: '/var/lib/yum/yumdb/f/27ef8f508b150c2162f1bdcb1bc41713836b88ee-fence- agents-ipdu-4.0.11-27.el7_2.9-x86_64/from_repo'
Such an I/O error indicates either a phyisical problem (storage broken) or filesystem full or read-only.
Do other opertions besides a "yum update" work properly? Specificly do disk operations succeed? Do you see any error messages in /var/log/messages respectively by "journalctl -b"?
Regards
Alexander
--------------------------------
Alexander,
Thanks for your assistance. I have not identified any problems with the drive, and have no difficulty reading or writing from the disc. E-mail is going in and out without a problem. I have not identified any other problem with the machine.
The disc space seems ok to me, here is the result of df
[root@localhost ~]# df -v Filesystem 1K-blocks Used Available Use% Mounted on /dev/mapper/centos_hmwk-root 52403200 12425172 39978028 24% / devtmpfs 863512 0 863512 0% /dev tmpfs 879348 0 879348 0% /dev/shm tmpfs 879348 58216 821132 7% /run tmpfs 879348 0 879348 0% /sys/fs/cgroup /dev/mapper/centos_hmwk-u0 1023500000 571429000 452071000 56% /u0 /dev/mapper/centos_hmwk-u1 1023500000 160669800 862830200 16% /u1 /dev/mapper/centos_hmwk-home 52403200 96148 52307052 1% /home /dev/mapper/centos_hmwk-u2 1023500000 310892544 712607456 31% /u2 /dev/mapper/centos_hmwk-u3 213371092 34736 213336356 1% /u3 /dev/mapper/centos_hmwk-u 511750000 66208428 445541572 13% /u /dev/sda2 508588 366236 142352 73% /boot /dev/sda1 204580 9640 194940 5% /boot/efi /dev/sdd1 2884105400 53040472 2684536980 2% /media/usbdrive tmpfs 175872 0 175872 0% /run/user/0
Am 14.12.2016 um 14:44 schrieb Gregory P. Ennis:
Everyone,
I am at a loss on this problem would appreciate some guidance as to where to start to fix it.
I noticed that my home gateway server was not being updated with the new kernel and other software, and when I ran yum it aborted with the following notices. I tried a yum clean all, but this did not fix the problem. I thought the problem may be related to one of the repos, but I have other machines in the same network that update properly. I disabled all repos except the BASE to try to simply the problem and still the same problem.
Any help would be appreciated.
Thanks,
Greg Ennis
Loaded plugins: aliases, changelog, fastestmirror, langpacks, product- id, search- : disabled-repos, subscription-manager, tmprepo, verify, versionlock This system is not registered with Subscription Management. You can use subscription-manager to register. base | 3.6 kB 00:00:00 (1/2): base/7/x86_64/group_gz | 155 kB 00:00:00 (2/2): base/7/x86_64/primary_db | 5.6 MB 00:00:01 Determining fastest mirrors * base: centos.mirror.lstn.net Traceback (most recent call last):
[ ...
OSError: [Errno 5] Input/output error: '/var/lib/yum/yumdb/f/27ef8f508b150c2162f1bdcb1bc41713836b88ee-fence- agents-ipdu-4.0.11-27.el7_2.9-x86_64/from_repo'
Such an I/O error indicates either a phyisical problem (storage broken) or filesystem full or read-only.
Do other opertions besides a "yum update" work properly? Specificly do disk operations succeed? Do you see any error messages in /var/log/messages respectively by "journalctl -b"?
Regards
Alexander
----------------------------------------------------------------------
Alexander,
After monitoring journalctl -b output, I am getting the following error messages. I am not sure what these error messages mean, but it causes me to believe you are correct that I have a disc problem? Is that correct?
Greg
Dec 15 17:20:06 HmWk smartd[961]: Device: /dev/sda [SAT], 220 Currently unreadable (pending) sectors Dec 15 17:20:06 HmWk smartd[961]: Device: /dev/sda [SAT], 30 Offline uncorrectable sectors
Dec 15 17:24:22 HmWk kernel: ata1.00: exception Emask 0x0 SAct 0x400000 SErr 0x40000 action 0x0 Dec 15 17:24:22 HmWk kernel: ata1.00: irq_stat 0x40000008 Dec 15 17:24:22 HmWk kernel: ata1: SError: { CommWake } Dec 15 17:24:22 HmWk kernel: ata1.00: failed command: READ FPDMA QUEUED Dec 15 17:24:22 HmWk kernel: ata1.00: cmd 60/08:b0:28:c4:cc/00:00:04:00:00/40 tag 22 ncq 4096 in res 41/40:00:28:c4:cc/00:00:04:00:00/40 Emask 0x409 (media error) <F> Dec 15 17:24:22 HmWk kernel: ata1.00: status: { DRDY ERR } Dec 15 17:24:22 HmWk kernel: ata1.00: error: { UNC }
Dec 15 17:24:22 HmWk kernel: blk_update_request: I/O error, dev sda, sector 80528424 Dec 15 17:24:22 HmWk kernel: ata1: EH complete Dec 15 17:24:22 HmWk kernel: XFS (dm-1): metadata I/O error: block 0x4b6d428 ("xfs_trans_read_buf_map") error 5 numblks 8
-
Alexander Dalloz -
Gregory P. Ennis