I have a R script that I am running from python with rpy2. On a debian system I run this:
apt-get install R-cran-ggplot2 R-cran-caret
And the script works. I want to move this to CentOS 7 system. There it cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what packages in CentOS 7 I need for dplyr, doBy, and ggplot2?
On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell larry.martell@gmail.com wrote:
I have a R script that I am running from python with rpy2. On a debian system I run this:
apt-get install R-cran-ggplot2 R-cran-caret
And the script works. I want to move this to CentOS 7 system. There it cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what packages in CentOS 7 I need for dplyr, doBy, and ggplot2?
They are not in the CentOS or epel distros. I have built both dplyr and ggplot2 for CentOS 6 and 7, using the spec file crated by R2spec (from epell) and rpmbuild. They both require building several other R packages, and a bit of tweaking to the %files portion of the spec file, but are doable. I've never tried doBy or caret. Feel free to contact me directly for more information,
Tony Schreiner
On Mon, Oct 30, 2017 at 10:56 AM Tony Schreiner anthony.schreiner@bc.edu wrote:
On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell larry.martell@gmail.com wrote:
I have a R script that I am running from python with rpy2. On a debian system I run this:
apt-get install R-cran-ggplot2 R-cran-caret
And the script works. I want to move this to CentOS 7 system. There it cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what packages in CentOS 7 I need for dplyr, doBy, and ggplot2?
They are not in the CentOS or epel distros. I have built both dplyr and ggplot2 for CentOS 6 and 7, using the spec file crated by R2spec (from epell) and rpmbuild. They both require building several other R packages, and a bit of tweaking to the %files portion of the spec file, but are doable. I've never tried doBy or caret. Feel free to contact me directly for more information,
Thanks for the reply. At least this will keep me from searching for them. Perhaps I will stick with debian.
You can install any R packages from CRAN using the "install.packages()" command form within R itself. This will download, compile, and install the packages into your personal user account. you might need to install some supporting *-devel RPM packages via "yum", but otherwise, it should work.
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On Mon, Oct 30, 2017 at 11:05 AM, Larry Martell larry.martell@gmail.com wrote:
On Mon, Oct 30, 2017 at 10:56 AM Tony Schreiner anthony.schreiner@bc.edu wrote:
On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell@gmail.com
wrote:
I have a R script that I am running from python with rpy2. On a debian system I run this:
apt-get install R-cran-ggplot2 R-cran-caret
And the script works. I want to move this to CentOS 7 system. There it cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what packages in CentOS 7 I need for dplyr, doBy, and ggplot2?
They are not in the CentOS or epel distros. I have built both dplyr and ggplot2 for CentOS 6 and 7, using the spec file crated by R2spec (from epell) and rpmbuild. They both require building several other R packages, and a bit of tweaking to the %files portion of the spec file, but are doable. I've never tried doBy or caret. Feel free to contact me directly for more information,
Thanks for the reply. At least this will keep me from searching for them. Perhaps I will stick with debian.
CentOS mailing list CentOS@centos.org https://lists.centos.org/mailman/listinfo/centos
On Mon, Oct 30, 2017 at 4:03 PM, Jason Edgecombe jwedgeco@uncc.edu wrote:
You can install any R packages from CRAN using the "install.packages()" command form within R itself. This will download, compile, and install the packages into your personal user account. you might need to install some supporting *-devel RPM packages via "yum", but otherwise, it should work.
Yes, but as I said I am running R from python with rpy2.
On Mon, Oct 30, 2017 at 11:05 AM, Larry Martell larry.martell@gmail.com wrote:
On Mon, Oct 30, 2017 at 10:56 AM Tony Schreiner anthony.schreiner@bc.edu wrote:
On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell@gmail.com
wrote:
I have a R script that I am running from python with rpy2. On a debian system I run this:
apt-get install R-cran-ggplot2 R-cran-caret
And the script works. I want to move this to CentOS 7 system. There it cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what packages in CentOS 7 I need for dplyr, doBy, and ggplot2?
They are not in the CentOS or epel distros. I have built both dplyr and ggplot2 for CentOS 6 and 7, using the spec file crated by R2spec (from epell) and rpmbuild. They both require building several other R packages, and a bit of tweaking to the %files portion of the spec file, but are doable. I've never tried doBy or caret. Feel free to contact me directly for more information,
Thanks for the reply. At least this will keep me from searching for them. Perhaps I will stick with debian.
CentOS mailing list CentOS@centos.org https://lists.centos.org/mailman/listinfo/centos
CentOS mailing list CentOS@centos.org https://lists.centos.org/mailman/listinfo/centos
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Tony Schreiner