Hello there,
I'm checking if I can upgrade safely from CentOS6.5 to 6.6 using yum, and here's what it says:
===================== [snip] --> Finished Dependency Resolution --> Running transaction check ---> Package kernel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased ---> Package kernel-devel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased ---> Package mpich2.x86_64 0:1.2.1-2.3.el6 will be obsoleted --> Processing Dependency: libmpich.so.1.2()(64bit) for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 --> Processing Dependency: libmpichf90.so.1.2()(64bit) for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 --> Processing Dependency: mpich2 for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 Package mpich2 is obsoleted by mpich, but obsoleting package does not provide for requirements --> Finished Dependency Resolution Error: Package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 (@epel) Requires: mpich2 Removing: mpich2-1.2.1-2.3.el6.x86_64 (@base) mpich2 = 1.2.1-2.3.el6 Obsoleted By: mpich-3.1-4.el6.x86_64 (base) Not found Error: Package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 (@epel) Requires: libmpichf90.so.1.2()(64bit) Removing: mpich2-1.2.1-2.3.el6.x86_64 (@base) libmpichf90.so.1.2()(64bit) Obsoleted By: mpich-3.1-4.el6.x86_64 (base) Not found Error: Package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 (@epel) Requires: libmpich.so.1.2()(64bit) Removing: mpich2-1.2.1-2.3.el6.x86_64 (@base) libmpich.so.1.2()(64bit) Obsoleted By: mpich-3.1-4.el6.x86_64 (base) Not found You could try using --skip-broken to work around the problem You could try running: rpm -Va --nofiles --nodigest =====================
Those packages depend on mpich2.x86_64:
boost-graph-mpich2 x86_64 1.41.0-18.el6 @base 440 k boost-mpich2 x86_64 1.41.0-18.el6 @base 353 k boost-mpich2-python x86_64 1.41.0-18.el6 @base 44 k hdf5-mpich2 x86_64 1.8.5.patch1-7.el6 @epel 6.8 M mpich2-devel x86_64 1.2.1-2.3.el6 @base 6.8 M
I presume it's the dep from hdf5mich from epel which is blocking.. Any hint about what I could do now?
Regards,
On 10/29/2014 03:59 AM, wwp wrote:
Hello there,
I'm checking if I can upgrade safely from CentOS6.5 to 6.6 using yum, and here's what it says:
===================== [snip] --> Finished Dependency Resolution --> Running transaction check ---> Package kernel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased ---> Package kernel-devel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased ---> Package mpich2.x86_64 0:1.2.1-2.3.el6 will be obsoleted --> Processing Dependency: libmpich.so.1.2()(64bit) for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 --> Processing Dependency: libmpichf90.so.1.2()(64bit) for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 --> Processing Dependency: mpich2 for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 Package mpich2 is obsoleted by mpich, but obsoleting package does not provide for requirements --> Finished Dependency Resolution Error: Package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 (@epel) Requires: mpich2 Removing: mpich2-1.2.1-2.3.el6.x86_64 (@base) mpich2 = 1.2.1-2.3.el6 Obsoleted By: mpich-3.1-4.el6.x86_64 (base) Not found Error: Package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 (@epel) Requires: libmpichf90.so.1.2()(64bit) Removing: mpich2-1.2.1-2.3.el6.x86_64 (@base) libmpichf90.so.1.2()(64bit) Obsoleted By: mpich-3.1-4.el6.x86_64 (base) Not found Error: Package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 (@epel) Requires: libmpich.so.1.2()(64bit) Removing: mpich2-1.2.1-2.3.el6.x86_64 (@base) libmpich.so.1.2()(64bit) Obsoleted By: mpich-3.1-4.el6.x86_64 (base) Not found You could try using --skip-broken to work around the problem You could try running: rpm -Va --nofiles --nodigest =====================
Those packages depend on mpich2.x86_64:
boost-graph-mpich2 x86_64 1.41.0-18.el6 @base 440 k boost-mpich2 x86_64 1.41.0-18.el6 @base 353 k boost-mpich2-python x86_64 1.41.0-18.el6 @base 44 k hdf5-mpich2 x86_64 1.8.5.patch1-7.el6 @epel 6.8 M mpich2-devel x86_64 1.2.1-2.3.el6 @base 6.8 M
I presume it's the dep from hdf5mich from epel which is blocking.. Any hint about what I could do now?
This is a known epel problem, they are working on it:
Hello Johnny,
On Wed, 29 Oct 2014 04:35:02 -0500 Johnny Hughes johnny@centos.org wrote:
On 10/29/2014 03:59 AM, wwp wrote:
Hello there,
I'm checking if I can upgrade safely from CentOS6.5 to 6.6 using yum, and here's what it says:
===================== [snip] --> Finished Dependency Resolution --> Running transaction check ---> Package kernel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased ---> Package kernel-devel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased ---> Package mpich2.x86_64 0:1.2.1-2.3.el6 will be obsoleted --> Processing Dependency: libmpich.so.1.2()(64bit) for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 --> Processing Dependency: libmpichf90.so.1.2()(64bit) for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 --> Processing Dependency: mpich2 for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 Package mpich2 is obsoleted by mpich, but obsoleting package does not provide for requirements --> Finished Dependency Resolution Error: Package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 (@epel) Requires: mpich2 Removing: mpich2-1.2.1-2.3.el6.x86_64 (@base) mpich2 = 1.2.1-2.3.el6 Obsoleted By: mpich-3.1-4.el6.x86_64 (base) Not found Error: Package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 (@epel) Requires: libmpichf90.so.1.2()(64bit) Removing: mpich2-1.2.1-2.3.el6.x86_64 (@base) libmpichf90.so.1.2()(64bit) Obsoleted By: mpich-3.1-4.el6.x86_64 (base) Not found Error: Package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 (@epel) Requires: libmpich.so.1.2()(64bit) Removing: mpich2-1.2.1-2.3.el6.x86_64 (@base) libmpich.so.1.2()(64bit) Obsoleted By: mpich-3.1-4.el6.x86_64 (base) Not found You could try using --skip-broken to work around the problem You could try running: rpm -Va --nofiles --nodigest =====================
Those packages depend on mpich2.x86_64:
boost-graph-mpich2 x86_64 1.41.0-18.el6 @base 440 k boost-mpich2 x86_64 1.41.0-18.el6 @base 353 k boost-mpich2-python x86_64 1.41.0-18.el6 @base 44 k hdf5-mpich2 x86_64 1.8.5.patch1-7.el6 @epel 6.8 M mpich2-devel x86_64 1.2.1-2.3.el6 @base 6.8 M
I presume it's the dep from hdf5mich from epel which is blocking.. Any hint about what I could do now?
This is a known epel problem, they are working on it:
Oh, well, thanks a bunch for the tip! I'll keep an eye on the bug.
Regards,
Hello,
On Wed, 29 Oct 2014 11:52:10 +0100 wwp subscript@free.fr wrote:
Hello Johnny,
On Wed, 29 Oct 2014 04:35:02 -0500 Johnny Hughes johnny@centos.org wrote:
On 10/29/2014 03:59 AM, wwp wrote:
Hello there,
I'm checking if I can upgrade safely from CentOS6.5 to 6.6 using yum, and here's what it says:
===================== [snip] --> Finished Dependency Resolution --> Running transaction check ---> Package kernel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased ---> Package kernel-devel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased ---> Package mpich2.x86_64 0:1.2.1-2.3.el6 will be obsoleted --> Processing Dependency: libmpich.so.1.2()(64bit) for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 --> Processing Dependency: libmpichf90.so.1.2()(64bit) for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 --> Processing Dependency: mpich2 for package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 Package mpich2 is obsoleted by mpich, but obsoleting package does not provide for requirements --> Finished Dependency Resolution Error: Package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 (@epel) Requires: mpich2 Removing: mpich2-1.2.1-2.3.el6.x86_64 (@base) mpich2 = 1.2.1-2.3.el6 Obsoleted By: mpich-3.1-4.el6.x86_64 (base) Not found Error: Package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 (@epel) Requires: libmpichf90.so.1.2()(64bit) Removing: mpich2-1.2.1-2.3.el6.x86_64 (@base) libmpichf90.so.1.2()(64bit) Obsoleted By: mpich-3.1-4.el6.x86_64 (base) Not found Error: Package: hdf5-mpich2-1.8.5.patch1-7.el6.x86_64 (@epel) Requires: libmpich.so.1.2()(64bit) Removing: mpich2-1.2.1-2.3.el6.x86_64 (@base) libmpich.so.1.2()(64bit) Obsoleted By: mpich-3.1-4.el6.x86_64 (base) Not found You could try using --skip-broken to work around the problem You could try running: rpm -Va --nofiles --nodigest =====================
Those packages depend on mpich2.x86_64:
boost-graph-mpich2 x86_64 1.41.0-18.el6 @base 440 k boost-mpich2 x86_64 1.41.0-18.el6 @base 353 k boost-mpich2-python x86_64 1.41.0-18.el6 @base 44 k hdf5-mpich2 x86_64 1.8.5.patch1-7.el6 @epel 6.8 M mpich2-devel x86_64 1.2.1-2.3.el6 @base 6.8 M
I presume it's the dep from hdf5mich from epel which is blocking.. Any hint about what I could do now?
This is a known epel problem, they are working on it:
Oh, well, thanks a bunch for the tip! I'll keep an eye on the bug.
For the sake of the archives, this is now fixed (since today), the bug is closed upstream and the EPEL6 stable repo is now showing a fixed hdf5-1.8.5.patch1-9.el6 package, allowing me to upgrade to CentOS 6.6 (even if http://dl.fedoraproject.org/pub/epel/6/x86_64/repoview/ doesn't show the package update yet).
Regards,
-
Johnny Hughes -
wwp